2.8 AI Section

The AI section provides users with a one-stop intelligent research assistant capability, integrating three core modules: AI conversation, server file management, and cutting-edge literature search and interpretation. Users can engage in research discussions with the AI assistant through the conversation window and invoke preset tasks to quickly launch common bioinformatics analysis scenarios. They can also browse and manage file resources in the server section, and search biomedical literature in the cutting-edge articles section with AI-powered summarization, interpretation, and source tracing.

2.8.1 AI Conversation

Upon entering the AI section, the conversation page is displayed by default. The top of the page shows the greeting "Hello, Researcher," with an input box in the center. Below it, various preset task cards are provided as quick entry points, and the left sidebar allows viewing of historical conversations.


New Chat

Click the "New Chat" button in the left sidebar to create a brand-new conversation window. All conversation content is retained under the "Today" and "New Sessions" groups in the left sidebar, making it easy for users to review and continue previous discussions.

Model Selection

On the left side of the conversation input box, users can click the model selector (e.g., qwen3.7-max) to switch between different AI models. The system provides responses with varying capabilities and styles based on the selected model's characteristics. Users can choose the most suitable model for analysis and conversation according to the specific task.

Quick Tasks

The conversation homepage offers a variety of preset task cards, including Data QC, Pipeline Recommendation, Full Pipeline Analysis, Enriched Interpretation, Downstream Analysis, Differential Association, Chart Report, AI Model Prediction, and more. Each task card comes with sample data paths and a brief feature description. Click "Refresh" to update task recommendations. Click any card to quickly enter the corresponding scenario's conversation, where the AI assistant automatically loads relevant context and guides the user through the corresponding bioinformatics analysis task.

Conversation Input

In the central input box on the page, users can enter specific research questions or analysis requirements. They can also click the "+" button on the left side of the input box to upload attachments. Click the "Send" button on the right to submit the question, and the AI assistant will provide a response based on the current model and context.

2.8.2 Server File Management

Click the "Server (/data)" tab at the top to switch to the server file management page. This page displays all folders and files in the current directory in a table format. Users can browse, upload, download, copy, delete, and perform other operations on server resources here.


File Search

A search box is located at the upper right of the file list. Users can enter keywords in the search box to filter files or folders matching the name in real time.

File List Refresh

Click the refresh button at the upper right of the file list to reload the file information of the current directory, ensuring the latest file status and modification time are displayed.

File Operations

Each file row provides multiple operation buttons on the right side. Common operations include Copy, Upload, Download, and Delete. Users can quickly perform corresponding actions on individual files.

Batch Selection

A checkbox is provided on the far left of each file row. Users can select multiple files and then perform batch operations (such as batch download, batch delete, etc.), improving the efficiency of handling large numbers of files.

2.8.3 Frontier Articles

Click the "Frontier Articles" tab at the top to switch to the literature search and interpretation page. This page provides capabilities for biomedical literature search, filtering, AI summarization, AI interpretation, PDF viewing, and source tracing. It serves as the core entry point for users to stay informed about the latest developments in their field.


Literature Search

Multiple search criteria are provided at the top of the page. After entering keywords in the "Keywords" input box, users can use the "Journal" dropdown to select a specific journal scope, and adjust the number of articles displayed per page (default 10) via the "Per Page" dropdown. Click the "Search" button to execute the search, and click the "Reset" button to clear the search criteria. Search results are presented below with pagination information such as "Showing 1-10 of 82 articles."

Data Status

The "Data Status" area on the left displays real-time statistics on the number of interpreted and downloaded articles, allowing users to intuitively track the processing progress and coverage of the current literature database.

Presets

The "Presets" area on the left provides saved search criteria and a list of frequently used journals. Click the "Settings" icon in the upper right corner to manage presets. Click any preset to quickly apply the corresponding filtering criteria.

AI Summary

An "AI Summary" button is provided in the upper right corner of each article card. Click it and the AI assistant will perform an in-depth interpretation of the article from multiple dimensions such as research background, methods, conclusions, and significance, and engage in further discussion with the user in a conversation format.

PDF

A "PDF" button is provided in the upper right corner of each article card. Click it to open the full-text PDF of the article directly in the browser, making it convenient for users to view the original research materials.

Source

A "Source" button is provided in the upper right corner of each article card. Click it to view the original source information of the article, including journal source (Source: PubMed), article status (Status: Interpreted), publication date, interpretation date, DOI, PMID, and other metadata, facilitating source tracing and citation for users.

Pagination

Pagination information such as "Page 1-10 of 82 articles" is displayed below the article list, along with pagination controls. Users can switch between different page numbers to browse search results.